Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015879333.1_cds_XP_016437116.1_32905
CDS Infomation

[gene=LOC107763165] [db_xref=GeneID:107763165] [protein=double-strand break repair protein MRE11-like isoform X2] [protein_id=XP_016437116.1] [location=complement(join(26865..26897,27609..27809,28536..28656,30089..30357,30484..30555,31928..32005,32130..32243,32781..32863,33933..33993,34112..34174,34279..34356,34500..34571,34717..34779,34867..34974,35073..35175,35317..35408,35491..35559,35636..35755,36529..36619,37125..37147))] [gbkey=CDS]
Sequence

ATGATCGACCTGTGCAATTCCAGGTTTGGTCATGTAAATTATGAAGATCCCCACTTTAAT
GTGGGGTTGCCTGTTTTTAGCATTCATGGCAATCATGATGATCCAGCTGGTGTGGATAAC
CTATCTGCCGTTGATATCCTTTCCGCATGCAATCTTGTTAACTATTTTGGTAAAATGGAT
CTTGGTGGTTCTGGTGTTGGGCAGATTGCTCTCTACCCTATCCTTATCAGGAAGGGTTCA
ACATCAGTAGCTCTTTATGGTCTTGGGAATATCAGGGACGAACGCTTGAATAGAATGTTT
CAGACACCACATGCTGTGCAATGGATGCGACCTGAGGCTCAGGAAAGGTGTCAAGTCTCG
GACTGGTTCAACATTTTGGTACTTCACCAGAACAGAGTAAAGACAAATCCGAAAAATGCA
ATAAATGAGCATTTCCTGCCTCGCTTTCTGGATTTTATTGTGTGGGGTCATGAACATGAA
TGTTTAGTGGACCCTCAGGAGGTCCCAGGTATGGGTTTTCACGTTACTCAGCCAGGTTCT
TCCGTTGCAACATCACTGATTGAGGGTGAATCAAAACAAAAACATGTACTCCTCTTAGAG
ATTAAGGGAAATCAATATCGCCCAACAAAGATACCTCTGAACTCAGTGCGGCCTTTTGAA
TATACTGAGGTAGTGTTGAAGGATGAACCTGATATTGATCCTAATGATCATAGCTCGATT
CTTGAACATTTGGATAGCGTAGTCAGGAAGTTGATAGAAAGATCTAATCAAAAGGCTAAT
AGTGAATCTGTTGTAAAGCTCCCCTTAGTTCGAGTAAAGGTAGACTACTCTGGGTTTATG
ACTATAAATCCTCAAAGGTTTGGACAAAAATATGTGGGGAAGGTTGCCAATCCGCAGGAT
ATTCTCATTTTCTCAAAATCATCAAAGAAGGTCGGCAAAGAAGCTAAATTTGATGATTCT
GAGCGGCTTCGCCCTGAAGAATTGAATCAGCAAAACATTGAAGCTTTAGTTGCTGAGAGC
AATTTGAAAATGGAGGTACTTCCAGTCAGCGATCTGGATGTTGCGCTGCACAATTTTGTT
AACAAGGATGACAAAATGGCTTTTTATTCTTGTGTACAATACAACCTTGAGGAAACTCGA
AATAAAATAGCCCGTGATTCAGATGCAGTGAAATTCGAAGAAGATGATATAATTTTAAAA
GTTGGAGAATGCTTAGAGGAACGCGTCAAACAAAGAGCTGCACAGAATAAAGATGATCAA
CCTTTCTCCTTTAATGGACAGTCCTTGGAGGATATCAGAGGCAAAAGTACTGCAGTAGGA
TCAGCAGTTTCATTCAGTGATGATGAGGACACCACTATGCTCTCCGCCTCAAAGTCTACT
GCCGGTAAAGGAAGAAATGAGTCATCTCAATCTTTTAGATCCTCTCGTGATGCTTCTGAA
GTTAGCAAGACCTCTTCAAGGGGAAGGGGCAGGGGCAGAGGCAGAGGCAGAGGAAGGGCT
TCCAATAGCTTGAAGCAGACAACTCTTGATGCATCTTTGGGATTCCGTCATTCACAGAGA
TCTGCATCGGTTGCTGCATCTGCATCAGTGCGAAGTATTGCTGAAGATGATGAGAATGTG
GAATCTCCTTCAAGTGATGAGGATGCTAAACAGGACACAAATGCTATTGATGAAAGCTCA
GGCGATGACAAGACAGTCCAGGGCAAAGGCCGCAAAAGGGCTGCTCCAAGGGGAAGGGGT
AGAGGTTCAACAACAGCGGCTAAAAGGGGAAGAAAATCAGATAGCTCCTCGTCTTCACTT
CAAAGGATGCTCATGGATGTAGATGAAGAAGATGATGATGATGATGACATGGCAAAGAAA
GAAAATAGACCTCGACCTCGGGTAACAAGGAATTATGGTGCTTTAAGGAGGTGA

Peptide Sequence

PEP ID

XP_016437116.1
PEP Infomation

PREDICTED: double-strand break repair protein MRE11-like isoform X2 [Nicotiana tabacum]
Sequence

MIDLCNSRFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMD
LGGSGVGQIALYPILIRKGSTSVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQERCQVS
DWFNILVLHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECLVDPQEVPGMGFHVTQPGS
SVATSLIEGESKQKHVLLLEIKGNQYRPTKIPLNSVRPFEYTEVVLKDEPDIDPNDHSSI
LEHLDSVVRKLIERSNQKANSESVVKLPLVRVKVDYSGFMTINPQRFGQKYVGKVANPQD
ILIFSKSSKKVGKEAKFDDSERLRPEELNQQNIEALVAESNLKMEVLPVSDLDVALHNFV
NKDDKMAFYSCVQYNLEETRNKIARDSDAVKFEEDDIILKVGECLEERVKQRAAQNKDDQ
PFSFNGQSLEDIRGKSTAVGSAVSFSDDEDTTMLSASKSTAGKGRNESSQSFRSSRDASE
VSKTSSRGRGRGRGRGRGRASNSLKQTTLDASLGFRHSQRSASVAASASVRSIAEDDENV
ESPSSDEDAKQDTNAIDESSGDDKTVQGKGRKRAAPRGRGRGSTTAAKRGRKSDSSSSSL
QRMLMDVDEEDDDDDDMAKKENRPRPRVTRNYGALRR

Transcript Sequence

Gene sequence data has not been registered.